PoplarV1, Main, Exploration, bibRecord, 004436

Gene expression in autumn leaves.

Identifieur interne : 004436 ( Main/Exploration ); précédent : 004435; suivant : 004437

Gene expression in autumn leaves.

Auteurs : Rupali Bhalerao [Suède] ; Johanna Keskitalo ; Fredrik Sterky ; Rikard Erlandsson ; Harry Björkbacka ; Simon Jonsson Birve ; Jan Karlsson ; Per Gardeström ; Petter Gustafsson ; Joakim Lundeberg ; Stefan Jansson

Source :

Plant physiology [ 0032-0889 ] ; 2003.

RBID : pubmed:12586868

Descripteurs français

KwdFr :
- ARN des plantes (génétique), ARN des plantes (métabolisme), Analyse de profil d'expression de gènes (méthodes), Aspartic acid endopeptidases (génétique), Aspartic acid endopeptidases (métabolisme), Bases de données génétiques (MeSH), Biologie informatique (MeSH), Cysteine endopeptidases (génétique), Cysteine endopeptidases (métabolisme), Feuilles de plante (croissance et développement), Feuilles de plante (génétique), Métabolisme lipidique (MeSH), Métallothionéine (génétique), Métallothionéine (métabolisme), Photosynthèse (génétique), Populus (croissance et développement), Populus (génétique), Protéines d'Arabidopsis (MeSH), Protéines végétales (génétique), Protéines végétales (métabolisme), Respiration cellulaire (génétique), Respiration cellulaire (physiologie), Régulation de l'expression des gènes végétaux (génétique), Saisons (MeSH), Étiquettes de séquences exprimées (MeSH).
MESH :
- croissance et développement : Feuilles de plante, Populus.
- génétique : ARN des plantes, Aspartic acid endopeptidases, Cysteine endopeptidases, Feuilles de plante, Métallothionéine, Photosynthèse, Populus, Protéines végétales, Respiration cellulaire, Régulation de l'expression des gènes végétaux.
- métabolisme : ARN des plantes, Aspartic acid endopeptidases, Cysteine endopeptidases, Métallothionéine, Protéines végétales.
- méthodes : Analyse de profil d'expression de gènes.
- physiologie : Respiration cellulaire.
- Bases de données génétiques, Biologie informatique, Métabolisme lipidique, Protéines d'Arabidopsis, Saisons, Étiquettes de séquences exprimées.

English descriptors

KwdEn :
- Arabidopsis Proteins (MeSH), Aspartic Acid Endopeptidases (genetics), Aspartic Acid Endopeptidases (metabolism), Cell Respiration (genetics), Cell Respiration (physiology), Computational Biology (MeSH), Cysteine Endopeptidases (genetics), Cysteine Endopeptidases (metabolism), Databases, Genetic (MeSH), Expressed Sequence Tags (MeSH), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (genetics), Lipid Metabolism (MeSH), Metallothionein (genetics), Metallothionein (metabolism), Photosynthesis (genetics), Plant Leaves (genetics), Plant Leaves (growth & development), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (genetics), Populus (growth & development), RNA, Plant (genetics), RNA, Plant (metabolism), Seasons (MeSH).
MESH :
- chemical , genetics : Aspartic Acid Endopeptidases, Cysteine Endopeptidases, Metallothionein, Plant Proteins, RNA, Plant.
- chemical , metabolism : Aspartic Acid Endopeptidases, Cysteine Endopeptidases, Metallothionein, Plant Proteins, RNA, Plant.
- chemical : Arabidopsis Proteins.
- genetics : Cell Respiration, Gene Expression Regulation, Plant, Photosynthesis, Plant Leaves, Populus.
- growth & development : Plant Leaves, Populus.
- methods : Gene Expression Profiling.
- physiology : Cell Respiration.
- Computational Biology, Databases, Genetic, Expressed Sequence Tags, Lipid Metabolism, Seasons.

Abstract

Two cDNA libraries were prepared, one from leaves of a field-grown aspen (Populus tremula) tree, harvested just before any visible sign of leaf senescence in the autumn, and one from young but fully expanded leaves of greenhouse-grown aspen (Populus tremula x tremuloides). Expressed sequence tags (ESTs; 5,128 and 4,841, respectively) were obtained from the two libraries. A semiautomatic method of annotation and functional classification of the ESTs, according to a modified Munich Institute of Protein Sequences classification scheme, was developed, utilizing information from three different databases. The patterns of gene expression in the two libraries were strikingly different. In the autumn leaf library, ESTs encoding metallothionein, early light-inducible proteins, and cysteine proteases were most abundant. Clones encoding other proteases and proteins involved in respiration and breakdown of lipids and pigments, as well as stress-related genes, were also well represented. We identified homologs to many known senescence-associated genes, as well as seven different genes encoding cysteine proteases, two encoding aspartic proteases, five encoding metallothioneins, and 35 additional genes that were up-regulated in autumn leaves. We also indirectly estimated the rate of plastid protein synthesis in the autumn leaves to be less that 10% of that in young leaves.

DOI: 10.1104/pp.012732
PubMed: 12586868
PubMed Central: PMC166820

Affiliations:

Suède

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 004545
to stream Main, to step Curation: 004545

Le document en format XML

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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis Proteins (MeSH)</term>
<term>Aspartic Acid Endopeptidases (genetics)</term>
<term>Aspartic Acid Endopeptidases (metabolism)</term>
<term>Cell Respiration (genetics)</term>
<term>Cell Respiration (physiology)</term>
<term>Computational Biology (MeSH)</term>
<term>Cysteine Endopeptidases (genetics)</term>
<term>Cysteine Endopeptidases (metabolism)</term>
<term>Databases, Genetic (MeSH)</term>
<term>Expressed Sequence Tags (MeSH)</term>
<term>Gene Expression Profiling (methods)</term>
<term>Gene Expression Regulation, Plant (genetics)</term>
<term>Lipid Metabolism (MeSH)</term>
<term>Metallothionein (genetics)</term>
<term>Metallothionein (metabolism)</term>
<term>Photosynthesis (genetics)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (growth & development)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Populus (genetics)</term>
<term>Populus (growth & development)</term>
<term>RNA, Plant (genetics)</term>
<term>RNA, Plant (metabolism)</term>
<term>Seasons (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN des plantes (génétique)</term>
<term>ARN des plantes (métabolisme)</term>
<term>Analyse de profil d'expression de gènes (méthodes)</term>
<term>Aspartic acid endopeptidases (génétique)</term>
<term>Aspartic acid endopeptidases (métabolisme)</term>
<term>Bases de données génétiques (MeSH)</term>
<term>Biologie informatique (MeSH)</term>
<term>Cysteine endopeptidases (génétique)</term>
<term>Cysteine endopeptidases (métabolisme)</term>
<term>Feuilles de plante (croissance et développement)</term>
<term>Feuilles de plante (génétique)</term>
<term>Métabolisme lipidique (MeSH)</term>
<term>Métallothionéine (génétique)</term>
<term>Métallothionéine (métabolisme)</term>
<term>Photosynthèse (génétique)</term>
<term>Populus (croissance et développement)</term>
<term>Populus (génétique)</term>
<term>Protéines d'Arabidopsis (MeSH)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Respiration cellulaire (génétique)</term>
<term>Respiration cellulaire (physiologie)</term>
<term>Régulation de l'expression des gènes végétaux (génétique)</term>
<term>Saisons (MeSH)</term>
<term>Étiquettes de séquences exprimées (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Aspartic Acid Endopeptidases</term>
<term>Cysteine Endopeptidases</term>
<term>Metallothionein</term>
<term>Plant Proteins</term>
<term>RNA, Plant</term>
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<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Aspartic Acid Endopeptidases</term>
<term>Cysteine Endopeptidases</term>
<term>Metallothionein</term>
<term>Plant Proteins</term>
<term>RNA, Plant</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>Arabidopsis Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Feuilles de plante</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cell Respiration</term>
<term>Gene Expression Regulation, Plant</term>
<term>Photosynthesis</term>
<term>Plant Leaves</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Plant Leaves</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN des plantes</term>
<term>Aspartic acid endopeptidases</term>
<term>Cysteine endopeptidases</term>
<term>Feuilles de plante</term>
<term>Métallothionéine</term>
<term>Photosynthèse</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Respiration cellulaire</term>
<term>Régulation de l'expression des gènes végétaux</term>
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<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN des plantes</term>
<term>Aspartic acid endopeptidases</term>
<term>Cysteine endopeptidases</term>
<term>Métallothionéine</term>
<term>Protéines végétales</term>
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<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Respiration cellulaire</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Cell Respiration</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Computational Biology</term>
<term>Databases, Genetic</term>
<term>Expressed Sequence Tags</term>
<term>Lipid Metabolism</term>
<term>Seasons</term>
</keywords>
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<term>Biologie informatique</term>
<term>Métabolisme lipidique</term>
<term>Protéines d'Arabidopsis</term>
<term>Saisons</term>
<term>Étiquettes de séquences exprimées</term>
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<front><div type="abstract" xml:lang="en">Two cDNA libraries were prepared, one from leaves of a field-grown aspen (Populus tremula) tree, harvested just before any visible sign of leaf senescence in the autumn, and one from young but fully expanded leaves of greenhouse-grown aspen (Populus tremula x tremuloides). Expressed sequence tags (ESTs; 5,128 and 4,841, respectively) were obtained from the two libraries. A semiautomatic method of annotation and functional classification of the ESTs, according to a modified Munich Institute of Protein Sequences classification scheme, was developed, utilizing information from three different databases. The patterns of gene expression in the two libraries were strikingly different. In the autumn leaf library, ESTs encoding metallothionein, early light-inducible proteins, and cysteine proteases were most abundant. Clones encoding other proteases and proteins involved in respiration and breakdown of lipids and pigments, as well as stress-related genes, were also well represented. We identified homologs to many known senescence-associated genes, as well as seven different genes encoding cysteine proteases, two encoding aspartic proteases, five encoding metallothioneins, and 35 additional genes that were up-regulated in autumn leaves. We also indirectly estimated the rate of plastid protein synthesis in the autumn leaves to be less that 10% of that in young leaves.</div>
</front>
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<DateCompleted><Year>2003</Year>
<Month>05</Month>
<Day>23</Day>
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<DateRevised><Year>2018</Year>
<Month>11</Month>
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<Abstract><AbstractText>Two cDNA libraries were prepared, one from leaves of a field-grown aspen (Populus tremula) tree, harvested just before any visible sign of leaf senescence in the autumn, and one from young but fully expanded leaves of greenhouse-grown aspen (Populus tremula x tremuloides). Expressed sequence tags (ESTs; 5,128 and 4,841, respectively) were obtained from the two libraries. A semiautomatic method of annotation and functional classification of the ESTs, according to a modified Munich Institute of Protein Sequences classification scheme, was developed, utilizing information from three different databases. The patterns of gene expression in the two libraries were strikingly different. In the autumn leaf library, ESTs encoding metallothionein, early light-inducible proteins, and cysteine proteases were most abundant. Clones encoding other proteases and proteins involved in respiration and breakdown of lipids and pigments, as well as stress-related genes, were also well represented. We identified homologs to many known senescence-associated genes, as well as seven different genes encoding cysteine proteases, two encoding aspartic proteases, five encoding metallothioneins, and 35 additional genes that were up-regulated in autumn leaves. We also indirectly estimated the rate of plastid protein synthesis in the autumn leaves to be less that 10% of that in young leaves.</AbstractText>
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<ForeName>Johanna</ForeName>
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Gene expression in autumn leaves.

Gene expression in autumn leaves.

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